Index

A

acc_corr_features() (in module biobss.imutools.acc_correlation) acc_freq_features() (in module biobss.imutools.acc_freqdomain) acc_stat_features() (in module biobss.imutools.acc_statistical) add_channel() (Bio_Data method)

add_events() (in module biobss.reader.polar_format) add_feature_step() (Bio_Pipeline method) add_process() (Process_List method) add_record_time() (in module biobss.reader.polar_format) apg_delineate() (in module biobss.ppgtools.ppg_peaks)

B

Bio_Data (class in biobss.pipeline.bio_data) Bio_Pipeline (class in biobss.pipeline.pipeline) Bio_Process (class in biobss.pipeline.bio_process) biobss module biobss.common module biobss.common.signal_entropy module biobss.common.signal_fft module biobss.common.signal_hjorth module biobss.common.signal_psd module biobss.ecgtools module biobss.ecgtools.ecg_features module biobss.ecgtools.ecg_filter module biobss.ecgtools.ecg_peaks module biobss.ecgtools.ecg_plot module biobss.ecgtools.ecg_sqa module biobss.edatools module biobss.edatools.eda_decompose module biobss.edatools.eda_features module biobss.edatools.eda_filter module biobss.edatools.eda_freqdomain module biobss.edatools.eda_hjorth module biobss.edatools.eda_peaks module biobss.edatools.eda_plot module biobss.edatools.eda_signalfeatures module biobss.edatools.eda_statistical module biobss.hrvtools module biobss.hrvtools.hrv_features module biobss.hrvtools.hrv_freqdomain module biobss.hrvtools.hrv_nonlinear module biobss.hrvtools.hrv_timedomain module biobss.imutools module biobss.imutools.acc_activityindex module biobss.imutools.acc_correlation module biobss.imutools.acc_features module biobss.imutools.acc_filter module biobss.imutools.acc_freqdomain module biobss.imutools.acc_plot module biobss.imutools.acc_statistical module biobss.pipeline module biobss.pipeline.bio_channel module

biobss.pipeline.bio_data module biobss.pipeline.bio_process module biobss.pipeline.bioprocess_queue module biobss.pipeline.channel_input module biobss.pipeline.event_channel module biobss.pipeline.event_input module biobss.pipeline.feature_extraction module biobss.pipeline.pipeline module biobss.plottools module biobss.plottools.plot_tools module biobss.ppgtools module biobss.ppgtools.ppg_features module biobss.ppgtools.ppg_filter module biobss.ppgtools.ppg_freqdomain module biobss.ppgtools.ppg_peaks module biobss.ppgtools.ppg_plot module biobss.ppgtools.ppg_sqa module biobss.ppgtools.ppg_statistical module biobss.ppgtools.ppg_timedomain module biobss.preprocess module biobss.preprocess.signal_detectpeaks module biobss.preprocess.signal_filter module biobss.preprocess.signal_normalize module biobss.preprocess.signal_resample module biobss.preprocess.signal_segment module biobss.reader module biobss.reader.polar_format module biobss.reader.polar_reader module biobss.resptools module biobss.resptools.resp_estimation module biobss.resptools.resp_plot module biobss.resptools.resp_preprocess module biobss.sqatools module biobss.sqatools.signal_quality module biobss.timetools module biobss.timetools.timestamp_tools module biobss.utils module biobss.utils.sample_loader module

C

calc_activity_index() (in module biobss.imutools.acc_activityindex) calc_rqi() (in module biobss.resptools.resp_estimation) calculate_shannon_entropy() (in module biobss.common.signal_entropy) calculate_sync_time() (in module biobss.reader.polar_format) Channel (class in biobss.pipeline.bio_channel) channel_count (Bio_Data property) check_morph() (in module biobss.sqatools.signal_quality) check_phys() (in module biobss.sqatools.signal_quality) check_timestamp() (in module biobss.timetools.timestamp_tools) clear_data() (Bio_Pipeline method) clear_features() (Bio_Pipeline method) clear_input() (Bio_Pipeline method)

convert_channel() (in module biobss.pipeline.channel_input) convert_event() (in module biobss.pipeline.event_input) convert_list_dict_to_dict_list() (in module biobss.pipeline.event_input) convert_windows() (Bio_Pipeline method) copy() (Bio_Data method) (Channel method) (Event_Channel method) correct_missing_duplicate_peaks() (in module biobss.ppgtools.ppg_peaks) create_signal_plot_matplotlib() (in module biobss.plottools.plot_tools) create_signal_plot_plotly() (in module biobss.plottools.plot_tools) create_timestamp_signal() (in module biobss.timetools.timestamp_tools) csv_to_pkl() (in module biobss.reader.polar_format)

D

detect_clipped_segments() (in module biobss.sqatools.signal_quality)

detect_flatline_segments() (in module biobss.sqatools.signal_quality) duration (Channel property)

E

ecg_detectpeaks() (in module biobss.ecgtools.ecg_peaks) eda_decompose() (in module biobss.edatools) (in module biobss.edatools.eda_decompose) eda_detectpeaks() (in module biobss.edatools.eda_peaks) eda_freq_features() (in module biobss.edatools.eda_freqdomain) eda_hjorth_features() (in module biobss.edatools.eda_hjorth) eda_signal_features() (in module biobss.edatools.eda_signalfeatures) eda_stat_features() (in module biobss.edatools.eda_statistical) elim_vhf() (in module biobss.resptools.resp_preprocess)

elim_vlf() (in module biobss.resptools.resp_preprocess) estimate_rr() (in module biobss.resptools.resp_estimation) Event_Channel (class in biobss.pipeline.event_channel) event_from_signal() (in module biobss.pipeline.event_input) event_names (Event_Channel property) export_data() (Bio_Pipeline method) export_features() (Bio_Pipeline method) extract_features() (Bio_Pipeline method) extract_resp_sig() (in module biobss.resptools.resp_estimation)

F

Feature (class in biobss.pipeline.feature_extraction) fft_peaks() (in module biobss.common.signal_fft) filter_acc() (in module biobss.imutools.acc_filter) filter_ecg() (in module biobss.ecgtools.ecg_filter) filter_eda() (in module biobss.edatools.eda_filter) filter_ppg() (in module biobss.ppgtools.ppg_filter) filter_resp_sig() (in module biobss.resptools.resp_estimation) filter_signal() (in module biobss.preprocess.signal_filter) from_cycles() (in module biobss.ppgtools.ppg_features) from_decomposed() (in module biobss.edatools) (in module biobss.edatools.eda_features)

from_decomposed_windows() (in module biobss.edatools) (in module biobss.edatools.eda_features) from_Rpeaks() (in module biobss.ecgtools.ecg_features) from_scl() (in module biobss.edatools.eda_features) from_scr() (in module biobss.edatools.eda_features) from_segment() (in module biobss.ppgtools.ppg_features) from_signal() (in module biobss.edatools) (in module biobss.edatools.eda_features) from_waves() (in module biobss.ecgtools.ecg_features) from_windows() (in module biobss.edatools) (in module biobss.edatools.eda_features) fuse_rr() (in module biobss.resptools.resp_estimation)

G

generate_dataset() (in module biobss.imutools.acc_activityindex) get_acc_features() (in module biobss.imutools.acc_features) get_channel_names() (Bio_Data method) get_data() (Bio_Pipeline method) get_domain_function() (in module biobss.hrvtools.hrv_features) (in module biobss.imutools.acc_features) (in module biobss.ppgtools.ppg_features) get_event() (Event_Channel method) get_feature_names() (in module biobss.edatools) (in module biobss.edatools.eda_signalfeatures) (in module biobss.edatools.eda_statistical)

get_features() (Bio_Pipeline method) get_hrv_features() (in module biobss.hrvtools.hrv_features) get_input() (Bio_Pipeline method) get_ppg_features() (in module biobss.ppgtools.ppg_features) get_process_by_name() (Process_List method) get_start_time() (in module biobss.reader.polar_format) get_timestamp() (Channel method) (Event_Channel method) get_window() (Channel method) (Event_Channel method) get_window_timestamps() (Channel method) (Event_Channel method)

H

hjorth_activity() (in module biobss.common.signal_hjorth) hjorth_complexity_mobility() (in module biobss.common.signal_hjorth)

hrv_freq_features() (in module biobss.hrvtools.hrv_freqdomain) hrv_nl_features() (in module biobss.hrvtools.hrv_nonlinear) hrv_time_features() (in module biobss.hrvtools.hrv_timedomain)

J

join() (Bio_Data method)

L

load_sample_data() (in module biobss.utils.sample_loader)

M

marker_to_events() (in module biobss.reader.polar_format) module biobss biobss.common biobss.common.signal_entropy biobss.common.signal_fft biobss.common.signal_hjorth biobss.common.signal_psd biobss.ecgtools biobss.ecgtools.ecg_features biobss.ecgtools.ecg_filter biobss.ecgtools.ecg_peaks biobss.ecgtools.ecg_plot biobss.ecgtools.ecg_sqa biobss.edatools biobss.edatools.eda_decompose biobss.edatools.eda_features biobss.edatools.eda_filter biobss.edatools.eda_freqdomain biobss.edatools.eda_hjorth biobss.edatools.eda_peaks biobss.edatools.eda_plot biobss.edatools.eda_signalfeatures biobss.edatools.eda_statistical biobss.hrvtools biobss.hrvtools.hrv_features biobss.hrvtools.hrv_freqdomain biobss.hrvtools.hrv_nonlinear biobss.hrvtools.hrv_timedomain biobss.imutools biobss.imutools.acc_activityindex biobss.imutools.acc_correlation biobss.imutools.acc_features biobss.imutools.acc_filter biobss.imutools.acc_freqdomain biobss.imutools.acc_plot biobss.imutools.acc_statistical biobss.pipeline biobss.pipeline.bio_channel biobss.pipeline.bio_data biobss.pipeline.bio_process biobss.pipeline.bioprocess_queue biobss.pipeline.channel_input biobss.pipeline.event_channel biobss.pipeline.event_input biobss.pipeline.feature_extraction biobss.pipeline.pipeline biobss.plottools biobss.plottools.plot_tools biobss.ppgtools biobss.ppgtools.ppg_features biobss.ppgtools.ppg_filter biobss.ppgtools.ppg_freqdomain biobss.ppgtools.ppg_peaks biobss.ppgtools.ppg_plot biobss.ppgtools.ppg_sqa biobss.ppgtools.ppg_statistical biobss.ppgtools.ppg_timedomain biobss.preprocess biobss.preprocess.signal_detectpeaks biobss.preprocess.signal_filter biobss.preprocess.signal_normalize biobss.preprocess.signal_resample biobss.preprocess.signal_segment biobss.reader biobss.reader.polar_format biobss.reader.polar_reader biobss.resptools biobss.resptools.resp_estimation biobss.resptools.resp_plot biobss.resptools.resp_preprocess biobss.sqatools biobss.sqatools.signal_quality biobss.timetools biobss.timetools.timestamp_tools biobss.utils biobss.utils.sample_loader

multichannel (Bio_Data property)

N

n_events (Event_Channel property) n_windows (Channel property) (Event_Channel property)

normalize_signal() (in module biobss.preprocess) (in module biobss.preprocess.signal_normalize)

P

peak_control() (in module biobss.ppgtools.ppg_peaks) peak_detection() (in module biobss.preprocess.signal_detectpeaks) plot_acc() (in module biobss.imutools.acc_plot) plot_ecg() (in module biobss.ecgtools.ecg_plot) plot_eda() (in module biobss.edatools.eda_plot) plot_ppg() (in module biobss.ppgtools.ppg_plot) plot_resp() (in module biobss.resptools.resp_plot) polar_csv_reader() (in module biobss.reader.polar_reader) ppg_delineate() (in module biobss.ppgtools.ppg_peaks)

ppg_detectbeats() (in module biobss.ppgtools.ppg_peaks) ppg_detectpeaks() (in module biobss.ppgtools.ppg_peaks) ppg_freq_features() (in module biobss.ppgtools.ppg_freqdomain) ppg_stat_features() (in module biobss.ppgtools.ppg_statistical) ppg_time_features() (in module biobss.ppgtools.ppg_timedomain) ppg_waves() (in module biobss.ppgtools.ppg_peaks) process() (Feature method) process_args() (Bio_Process method) Process_List (class in biobss.pipeline.bioprocess_queue)

R

remove_channel() (Bio_Data method) rename_channel() (Bio_Data method) rename_csv() (in module biobss.reader.polar_format) resample_signal() (in module biobss.preprocess) (in module biobss.preprocess.signal_resample)

resample_signal_object() (in module biobss.preprocess.signal_resample) run() (Bio_Process method) run_next() (Process_List method) run_pipeline() (Bio_Pipeline method) run_process_queue() (Process_List method) run_single() (Process_List method)

S

segment_signal() (in module biobss.preprocess) (in module biobss.preprocess.signal_segment) segmented (Channel property) (Event_Channel property) set_input() (Bio_Pipeline method) set_window_parameters() (Bio_Pipeline method)

sig_fft() (in module biobss.common.signal_fft) sig_power() (in module biobss.common.signal_psd) sig_psd() (in module biobss.common.signal_psd) sqa_ecg() (in module biobss.ecgtools.ecg_sqa) sqa_ppg() (in module biobss.ppgtools.ppg_sqa) synchronize_signals() (in module biobss.reader.polar_format)

T

template_matching() (in module biobss.sqatools.signal_quality)

timestamp_to_msec() (in module biobss.reader.polar_format) txt_to_csv() (in module biobss.reader.polar_format)

V

vpg_delineate() (in module biobss.ppgtools.ppg_peaks)